STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000612845_01666Unannotated protein. (311 aa)    
Predicted Functional Partners:
GCA_000612845_01127
Unannotated protein.
    
   0.580
GCA_000612845_02096
Unannotated protein.
    
   0.580
GCA_000612845_01718
Unannotated protein.
  
 0.545
GCA_000612845_02193
Unannotated protein.
    
 0.531
GCA_000612845_03086
Unannotated protein.
   
 
 0.519
GCA_000612845_00482
Unannotated protein.
    
 0.480
GCA_000612845_03931
Unannotated protein.
    
 0.471
GCA_000612845_03725
Unannotated protein.
  
 
  0.469
GCA_000612845_02319
Unannotated protein.
     
 0.468
GCA_000612845_00623
Unannotated protein.
    
  0.466
Your Current Organism:
Clostridium ihumii
NCBI taxonomy Id: 1211817
Other names: C. ihumii AP5, Candidatus Clostridium anorexicamassiliense AP5, Clostridium ihumii AP5, Clostridium sp. AP5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.