STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY04_0606DNA-binding response regulator, LuxR family. (199 aa)    
Predicted Functional Partners:
APY04_2749
Sensor histidine kinase.
  
  0.876
APY04_0654
Two-component sensor histidine kinase.
  
  0.875
APY04_2758
Sensor histidine kinase.
  
  0.874
APY04_1938
Hypothetical protein.
   
 0.869
APY04_3011
Two-component hybrid sensor and regulator.
   
 0.869
APY04_1489
Two-component hybrid sensor and regulator.
   
 0.855
APY04_3255
Multi-sensor hybrid histidine kinase.
   
 0.821
APY04_2964
Two-component response regulator.
  
     0.773
APY04_2694
Methyl-accepting chemotaxis protein.
   
 0.728
APY04_3479
Two-component oxygen-sensor histidine kinase FixL.
   
 0.720
Your Current Organism:
Hyphomicrobium sulfonivorans
NCBI taxonomy Id: 121290
Other names: ATCC BAA-113, DSM 13863, H. sulfonivorans, Hyphomicrobium sp. S1, Hyphomicrobium sulfonivorans Borodina et al. 2002, strain S1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.