STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B446_04905Uncharacterized protein; COG2846 Regulator of cell morphogenesis and NO signaling (187 aa)    
Predicted Functional Partners:
B446_29930
annotation not available
  
     0.611
B446_29915
annotation not available
  
     0.590
B446_29955
annotation not available
  
     0.570
B446_29940
annotation not available
 
     0.557
B446_03705
annotation not available
  
     0.523
B446_03690
annotation not available
  
     0.452
AGS66944.1
COG0789 Predicted transcriptional regulators
  
    0.450
B446_00520
Regulatory protein MerR; COG0789 Predicted transcriptional regulators
  
    0.450
B446_29920
Gas vesicle structural protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure
  
     0.445
B446_08100
annotation not available
  
     0.430
Your Current Organism:
Streptomyces collinus
NCBI taxonomy Id: 1214242
Other names: S. collinus Tu 365, Streptomyces collinus, Streptomyces collinus Tu 365
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