STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JG29_12610Uncharacterized protein. (126 aa)    
Predicted Functional Partners:
JG29_12600
Uncharacterized protein.
 
     0.874
JG29_04090
TetR family transctiptional regulator.
  
     0.588
JG29_08810
Integral membrane protein.
  
     0.526
JG29_02030
MccC family protein.
  
     0.515
JG29_08800
LytTr DNA-binding domain protein.
 
     0.495
JG29_10200
Hypothetical protein.
  
     0.446
JG29_12620
Uncharacterized protein.
       0.439
JG29_04280
Uncharacterized protein.
  
     0.401
Your Current Organism:
Lactobacillus mellis
NCBI taxonomy Id: 1218508
Other names: CCUG 63289, DSM 26255, L. mellis, Lactobacillus mellis Olofsson et al. 2014, Lactobacillus sp. H1HS38N, Lactobacillus sp. Hon2, Lactobacillus sp. Hon2N, strain Hon2N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.