STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CD32_08875Syd protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)    
Predicted Functional Partners:
CD32_08880
Hypothetical protein; SMI1 / KNR4; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.697
CD32_08870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.516
CD32_08865
Hypothetical protein; SMI1 / KNR4; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
Your Current Organism:
Lysinibacillus odysseyi
NCBI taxonomy Id: 1220589
Other names: Bacillus odysseyi 34hs-1, Bacillus odysseyi NBRC 100172, Bacillus odysseyi NBRC 100172 = 34hs-1, Bacillus sp. 34hs1, L. odysseyi 34hs-1 = NBRC 100172, Lysinibacillus odysseyi 34hs-1 = NBRC 100172, Lysinibacillus odysseyi DSM 18869, Lysinibacillus odysseyi NBRC 100172, Lysinibacillus odysseyi NBRC 100172 = 34hs-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.