Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| NMB0208 | NMB1287 | NMB0208 | NMB1287 | Ferredoxin, 4Fe-4S bacterial type; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | Putative ferredoxin; Identified by similarity to EGAD:28315; match to protein family HMM PF00111. | 0.730 |
| NMB0208 | aat | NMB0208 | NMB0206 | Ferredoxin, 4Fe-4S bacterial type; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | 0.745 |
| NMB0208 | gapA-1 | NMB0208 | NMB0207 | Ferredoxin, 4Fe-4S bacterial type; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | Glyceraldehyde 3-phosphate dehydrogenase; Identified by similarity to EGAD:43320; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.764 |
| NMB1287 | NMB0208 | NMB1287 | NMB0208 | Putative ferredoxin; Identified by similarity to EGAD:28315; match to protein family HMM PF00111. | Ferredoxin, 4Fe-4S bacterial type; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.730 |
| NMB1287 | aat | NMB1287 | NMB0206 | Putative ferredoxin; Identified by similarity to EGAD:28315; match to protein family HMM PF00111. | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | 0.726 |
| NMB1287 | gapA-1 | NMB1287 | NMB0207 | Putative ferredoxin; Identified by similarity to EGAD:28315; match to protein family HMM PF00111. | Glyceraldehyde 3-phosphate dehydrogenase; Identified by similarity to EGAD:43320; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.532 |
| NMB1669 | aat | NMB1669 | NMB0206 | Iron-starvation protein PigA; Identified by similarity to GP:3091146; match to protein family HMM PF01126. | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | 0.408 |
| aat | NMB0208 | NMB0206 | NMB0208 | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Ferredoxin, 4Fe-4S bacterial type; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.745 |
| aat | NMB1287 | NMB0206 | NMB1287 | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Putative ferredoxin; Identified by similarity to EGAD:28315; match to protein family HMM PF00111. | 0.726 |
| aat | NMB1669 | NMB0206 | NMB1669 | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Iron-starvation protein PigA; Identified by similarity to GP:3091146; match to protein family HMM PF01126. | 0.408 |
| aat | bamE | NMB0206 | NMB0204 | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.463 |
| aat | clpS | NMB0206 | NMB0837 | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Conserved hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.803 |
| aat | dapB | NMB0206 | NMB0203 | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | 0.460 |
| aat | fur | NMB0206 | NMB0205 | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Ferric uptake regulation protein; Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes. Regulates the expression of the fbp protein. | 0.705 |
| aat | gapA-1 | NMB0206 | NMB0207 | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Glyceraldehyde 3-phosphate dehydrogenase; Identified by similarity to EGAD:43320; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.590 |
| aat | pheA | NMB0206 | NMB0446 | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Chorismate mutase/prephenate dehydratase; Identified by similarity to GP:4105530; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807. | 0.463 |
| bamE | aat | NMB0204 | NMB0206 | Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | 0.463 |
| bamE | dapB | NMB0204 | NMB0203 | Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | 0.846 |
| bamE | fur | NMB0204 | NMB0205 | Putative lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Ferric uptake regulation protein; Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes. Regulates the expression of the fbp protein. | 0.621 |
| clpS | aat | NMB0837 | NMB0206 | Conserved hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | 0.803 |
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