Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| NMB0752 | bfrA | NMB0752 | NMB1207 | Putative bacterioferritin-associated ferredoxin; Identified by similarity to GP:4378826; match to protein family HMM PF04324. | Bacterioferritin A; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. | 0.612 |
| NMB0752 | bfrB | NMB0752 | NMB1206 | Putative bacterioferritin-associated ferredoxin; Identified by similarity to GP:4378826; match to protein family HMM PF04324. | Bacterioferritin B; Iron-storage protein. | 0.620 |
| NMB1205 | bfrA | NMB1205 | NMB1207 | Hypothetical protein; Identified by Glimmer2; putative. | Bacterioferritin A; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. | 0.437 |
| NMB1205 | bfrB | NMB1205 | NMB1206 | Hypothetical protein; Identified by Glimmer2; putative. | Bacterioferritin B; Iron-storage protein. | 0.491 |
| NMB1208 | bfrA | NMB1208 | NMB1207 | Hypothetical protein; Identified by Glimmer2; putative. | Bacterioferritin A; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. | 0.556 |
| NMB1208 | bfrB | NMB1208 | NMB1206 | Hypothetical protein; Identified by Glimmer2; putative. | Bacterioferritin B; Iron-storage protein. | 0.503 |
| NMB1438 | bfrA | NMB1438 | NMB1207 | Conserved hypothetical protein; Identified by similarity to EGAD:89509; match to protein family HMM PF00037; match to protein family HMM TIGR00273. | Bacterioferritin A; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. | 0.414 |
| NMB1438 | bfrB | NMB1438 | NMB1206 | Conserved hypothetical protein; Identified by similarity to EGAD:89509; match to protein family HMM PF00037; match to protein family HMM TIGR00273. | Bacterioferritin B; Iron-storage protein. | 0.437 |
| NMB1438 | nuoD | NMB1438 | NMB0244 | Conserved hypothetical protein; Identified by similarity to EGAD:89509; match to protein family HMM PF00037; match to protein family HMM TIGR00273. | NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.509 |
| NMB1438 | nuoE | NMB1438 | NMB0245 | Conserved hypothetical protein; Identified by similarity to EGAD:89509; match to protein family HMM PF00037; match to protein family HMM TIGR00273. | NADH dehydrogenase I, E subunit; Identified by similarity to EGAD:102345; match to protein family HMM PF01257; match to protein family HMM TIGR01958. | 0.437 |
| NMB1669 | bfrA | NMB1669 | NMB1207 | Iron-starvation protein PigA; Identified by similarity to GP:3091146; match to protein family HMM PF01126. | Bacterioferritin A; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. | 0.900 |
| NMB1669 | bfrB | NMB1669 | NMB1206 | Iron-starvation protein PigA; Identified by similarity to GP:3091146; match to protein family HMM PF01126. | Bacterioferritin B; Iron-storage protein. | 0.900 |
| NMB1669 | hemH | NMB1669 | NMB0718 | Iron-starvation protein PigA; Identified by similarity to GP:3091146; match to protein family HMM PF01126. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.900 |
| bfrA | NMB0752 | NMB1207 | NMB0752 | Bacterioferritin A; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. | Putative bacterioferritin-associated ferredoxin; Identified by similarity to GP:4378826; match to protein family HMM PF04324. | 0.612 |
| bfrA | NMB1205 | NMB1207 | NMB1205 | Bacterioferritin A; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. | Hypothetical protein; Identified by Glimmer2; putative. | 0.437 |
| bfrA | NMB1208 | NMB1207 | NMB1208 | Bacterioferritin A; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. | Hypothetical protein; Identified by Glimmer2; putative. | 0.556 |
| bfrA | NMB1438 | NMB1207 | NMB1438 | Bacterioferritin A; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. | Conserved hypothetical protein; Identified by similarity to EGAD:89509; match to protein family HMM PF00037; match to protein family HMM TIGR00273. | 0.414 |
| bfrA | NMB1669 | NMB1207 | NMB1669 | Bacterioferritin A; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. | Iron-starvation protein PigA; Identified by similarity to GP:3091146; match to protein family HMM PF01126. | 0.900 |
| bfrA | bfrB | NMB1207 | NMB1206 | Bacterioferritin A; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. | Bacterioferritin B; Iron-storage protein. | 0.983 |
| bfrA | hemH | NMB1207 | NMB0718 | Bacterioferritin A; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.909 |
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