STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C467_11320COG1691 NCAIR mutase (PurE)-related proteins. (262 aa)    
Predicted Functional Partners:
C467_11460
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; COG1606 ATP-utilizing enzymes of the PP-loop superfamily.
 
  
 0.964
C467_12193
Hypothetical protein; Belongs to the LarC family.
 
  
 0.920
C467_11325
Hypothetical protein.
       0.647
C467_11315
Hypothetical protein.
       0.541
C467_11310
Excinuclease ABC subunit C; COG2827 Predicted endonuclease containing a URI domain.
       0.445
C467_04116
Cobalt transporter.
 
    0.419
dtdA
Hypothetical protein; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.
       0.416
C467_10181
Bifunctional UGMP family protein/serine/threonine protein kinase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is a component of the KEOPS complex that is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. The Kae1 domain likely plays a direct catalytic role in this reaction. The Bud32 domain probably displays kinase activity that regulates Kae1 function. In the N-terminal section; belongs to the KAE1 / TsaD family.
       0.403
Your Current Organism:
Halorubrum hochstenium
NCBI taxonomy Id: 1227481
Other names: H. hochstenium ATCC 700873, Halorubrum hochstenium ATCC 700873
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