STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ54233.14-hydroxyphenylpyruvate dioxygenase. (366 aa)    
Predicted Functional Partners:
SEJ94354.1
Homogentisate 1,2-dioxygenase.
 
 0.998
SEJ81128.1
Aromatic amino acid aminotransferase apoenzyme.
  
 
 0.965
SEJ81349.1
4a-hydroxytetrahydrobiopterin dehydratase.
  
  
 0.876
SEJ53463.1
methylmalonyl-CoA mutase.
    
 0.857
SEJ88731.1
(R)-ethylmalonyl-CoA mutase.
    
 0.857
SEJ94230.1
Maleylacetoacetate isomerase.
 
  
 0.848
SEJ94338.1
Fumarylacetoacetate hydrolase.
 
  
 0.843
gatA
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
  
 
  0.810
SEI80805.1
3-methylcrotonyl-CoA carboxylase beta subunit.
 
 
 0.783
SEI69117.1
Acyl transferase domain-containing protein.
    
 0.776
Your Current Organism:
Cribrihabitans marinus
NCBI taxonomy Id: 1227549
Other names: C. marinus, CGMCC 1.13219, Cribrihabitans marinus Chen et al. 2014, DSM 29340, JCM 19401, Phaeobacter sp. CZ-AM5, strain CZ-AM5
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