STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ94099.1Ubiquinone biosynthesis protein COQ9. (229 aa)    
Predicted Functional Partners:
SEJ94109.1
Putative NAD(P)H quinone oxidoreductase, PIG3 family.
  
   0.866
rplB
LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 0.843
rpsU
SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family.
       0.708
SEJ29640.1
Protein of unknown function.
  
     0.650
SEI98247.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.623
SEJ65242.1
Hypothetical protein.
  
     0.619
SEJ50557.1
Uncharacterized conserved protein, contains Zn-finger domain.
  
     0.569
SEJ94399.1
Chromosome partitioning protein.
  
     0.536
SEI40744.1
Ubiquinone biosynthesis protein.
   
 
 0.534
SEK00629.1
2-octaprenylphenol hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.
   
 
 0.534
Your Current Organism:
Cribrihabitans marinus
NCBI taxonomy Id: 1227549
Other names: C. marinus, CGMCC 1.13219, Cribrihabitans marinus Chen et al. 2014, DSM 29340, JCM 19401, Phaeobacter sp. CZ-AM5, strain CZ-AM5
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