STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompAOuter membrane protein A; Identified by sequence similarity; putative. (300 aa)    
Predicted Functional Partners:
AFT89639.1
Type VI secretion system protein ImpM; Identified by sequence similarity; putative.
 
  
 0.914
AFT89640.1
Type VI secretion system protein ImpL; Identified by sequence similarity; putative.
 
  
 0.876
AFT89641.1
Identified by sequence similarity; putative.
 
   
 0.831
AFT89628.1
Type VI secretion system protein VasD; Identified by sequence similarity; putative.
  
  
 0.727
AFT89626.1
Type VI secretion system protein ImpK; Identified by sequence similarity; putative.
 
  
 0.691
AFT89632.1
Type VI secretion system secreted protein Hcp; Identified by sequence similarity; putative.
  
  
 0.679
AFT89633.1
Type VI secretion system protein ImpF; Identified by sequence similarity; putative.
  
  
 0.632
AFT89627.1
Type VI secretion system protein ImpJ; Identified by sequence similarity; putative.
 
  
 0.601
AFT84283.1
Paar motif family protein; Identified by sequence similarity; putative.
 
     0.595
AFT89637.1
Type VI secretion system protein ImpA; Identified by sequence similarity; putative.
  
     0.594
Your Current Organism:
Paraburkholderia phenoliruptrix
NCBI taxonomy Id: 1229205
Other names: Burkholderia phenoliruptrix BR3459a, P. phenoliruptrix BR3459a, Paraburkholderia phenoliruptrix BR3459a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.