STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompAOuter membrane protein A; Identified by sequence similarity; putative; Belongs to the ompA family (300 aa)    
Predicted Functional Partners:
BUPH_06114
Type VI secretion system protein ImpM; Identified by sequence similarity; putative
 
  
 0.958
BUPH_06113
Type VI secretion system protein ImpL; Identified by sequence similarity; putative
 
  
 0.930
BUPH_06499
Identified by sequence similarity; putative
 
  
 0.856
BUPH_06684
Paar motif family protein; Identified by sequence similarity; putative
 
    0.799
BUPH_06121
Type VI secretion system secreted protein Hcp; Identified by sequence similarity; putative
 
   
 0.700
BUPH_06127
Type VI secretion system protein ImpK; Identified by sequence similarity; putative
 
  
 0.663
BUPH_06125
Type VI secretion system protein VasD; Identified by sequence similarity; putative
  
   
 0.652
BUPH_06120
Type VI secretion system protein ImpF; Identified by sequence similarity; putative
 
   
 0.616
BUPH_06116
Type VI secretion system protein ImpA; Identified by sequence similarity; putative
 
  
 0.606
BUPH_06126
Type VI secretion system protein ImpJ; Identified by sequence similarity; putative
  
  
 0.559
Your Current Organism:
Burkholderia phenoliruptrix
NCBI taxonomy Id: 1229205
Other names: B. phenoliruptrix BR3459a, Burkholderia phenoliruptrix, Burkholderia phenoliruptrix BR3459a
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