STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BUPH_06123Type VI secretion system protein ImpB; Identified by sequence similarity; putative (175 aa)    
Predicted Functional Partners:
BUPH_06122
Type VI secretion system protein ImpC; Identified by sequence similarity; putative
 
 0.997
BUPH_06121
Type VI secretion system secreted protein Hcp; Identified by sequence similarity; putative
 
 
 0.971
BUPH_01741
Type VI secretion system protein ImpC; Identified by sequence similarity; putative
 
 0.956
BUPH_06120
Type VI secretion system protein ImpF; Identified by sequence similarity; putative
 
  
 0.918
BUPH_06119
Type VI secretion system protein ImpG; Identified by sequence similarity; putative
 
  
 0.898
BUPH_06118
Type VI secretion system protein ImpH; Identified by sequence similarity; putative
 
  
 0.897
BUPH_06116
Type VI secretion system protein ImpA; Identified by sequence similarity; putative
 
  
 0.886
BUPH_06117
Type VI secretion system protein VasG; Identified by sequence similarity; putative
 
  
 0.852
BUPH_03921
Type VI secretion system Vgr family protein; Identified by sequence similarity; putative
 
  
 0.838
BUPH_06126
Type VI secretion system protein ImpJ; Identified by sequence similarity; putative
 
  
 0.838
Your Current Organism:
Burkholderia phenoliruptrix
NCBI taxonomy Id: 1229205
Other names: B. phenoliruptrix BR3459a, Burkholderia phenoliruptrix, Burkholderia phenoliruptrix BR3459a
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