STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_14965Uncharacterized protein. (196 aa)    
Predicted Functional Partners:
PFICI_02893
Pre-mRNA-splicing factor SLU7.
   
 0.958
PFICI_13748
WD_REPEATS_REGION domain-containing protein.
    
 0.956
PFICI_07435
Uncharacterized protein.
    
 0.916
PFICI_08897
Sde2_N_Ubi domain-containing protein.
    
 0.912
PFICI_04438
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
   0.845
PFICI_13239
Small nuclear ribonucleoprotein G.
    
   0.844
PFICI_04533
U2 small nuclear ribonucleoprotein A.
    
   0.811
PFICI_11763
Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.
    
   0.808
PFICI_03746
Pre-mRNA-splicing factor syf-2.
   
  0.805
PFICI_11690
MI domain-containing protein.
    
 0.802
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.