STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_11426pH-response regulator protein palA/RIM20. (862 aa)    
Predicted Functional Partners:
PFICI_07128
Vacuolar-sorting protein SNF7.
    
 0.991
PFICI_04455
Vacuolar protein-sorting protein BRO1.
     
0.951
PFICI_08173
Uncharacterized protein.
    
 
 0.852
PFICI_02205
Uncharacterized protein.
   
 0.808
PFICI_00441
Uncharacterized protein.
  
 
 
 0.766
PFICI_05465
Uncharacterized protein.
    
 0.732
PFICI_14432
Vacuolar protein sorting-associated protein 4; Belongs to the AAA ATPase family.
   
 0.704
PFICI_08597
Uncharacterized protein.
    
 0.678
PFICI_05270
Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.
    
 
 0.669
PFICI_01193
Arrestin_C domain-containing protein.
    
 
 0.665
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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