STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFICI_07926Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (546 aa)    
Predicted Functional Partners:
PFICI_11206
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
 0.997
PFICI_11113
Uncharacterized protein.
   
 0.994
PFICI_06825
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.993
PFICI_05866
40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
    
 0.987
PFICI_14915
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
  
  0.984
PFICI_08113
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.983
PFICI_02892
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
  0.983
PFICI_12961
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 0.937
PFICI_11347
Protein arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily.
    
 
 0.935
PFICI_01804
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
 0.925
Your Current Organism:
Pestalotiopsis fici
NCBI taxonomy Id: 1229662
Other names: P. fici W106-1, Pestalotiopsis fici W106-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.