STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C476_02117COG0736 Phosphopantetheinyl transferase (holo-ACP synthase). (148 aa)    
Predicted Functional Partners:
acpP
COG0236 Acyl carrier protein.
 
     0.807
C476_02112
COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
       0.778
C476_13418
dephospho-CoA kinase-like protein; COG0237 Dephospho-CoA kinase.
    
 0.747
C476_04785
COG1324 Uncharacterized protein involved in tolerance to divalent cations.
    
  0.723
C476_02097
COG0208 Ribonucleotide reductase, beta subunit.
     
 0.701
C476_02127
3-oxoacyl-ACP reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
     
 0.700
C476_02122
COG0331 (acyl-carrier-protein) S-malonyltransferase.
       0.684
C476_15198
COG0294 Dihydropteroate synthase and related enzymes.
 
  
  0.649
C476_06407
COG0285 Folylpolyglutamate synthase.
 
  
  0.646
C476_02102
Zn-dependent oxidoreductase; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
       0.610
Your Current Organism:
Haloterrigena limicola
NCBI taxonomy Id: 1230457
Other names: H. limicola JCM 13563, Haloterrigena limicola AX-7, Haloterrigena limicola JCM 13563, Haloterrigena sp. AX-7, Haloterrigena sp. strain AX-7
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