STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C476_17722Hypothetical protein. (402 aa)    
Predicted Functional Partners:
C476_17717
Conjugation protein; COG3451 Type IV secretory pathway, VirB4 components.
       0.869
C476_17707
Hypothetical protein; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
       0.867
C476_17712
Hypothetical protein.
       0.786
C476_17727
Hypothetical protein.
       0.780
C476_17732
Hypothetical protein.
       0.778
C476_15383
Conjugation protein; COG3451 Type IV secretory pathway, VirB4 components.
       0.448
C476_15373
Hypothetical protein.
       0.440
C476_17702
Hypothetical protein.
       0.405
Your Current Organism:
Haloterrigena limicola
NCBI taxonomy Id: 1230457
Other names: H. limicola JCM 13563, Haloterrigena limicola AX-7, Haloterrigena limicola JCM 13563, Haloterrigena sp. AX-7, Haloterrigena sp. strain AX-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.