Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACO02962.1 | ACO04067.1 | PERMA_0218 | PERMA_0653 | Cysteine desulfurase (Nitrogenase metalloclustersbiosynthesis protein NifS); Identified by match to protein family HMM PF00266. | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | 0.915 |
| ACO02962.1 | ACO04466.1 | PERMA_0218 | PERMA_0517 | Cysteine desulfurase (Nitrogenase metalloclustersbiosynthesis protein NifS); Identified by match to protein family HMM PF00266. | Ferredoxin-sulfite reductase; Identified by match to protein family HMM PF01077; match to protein family HMM PF01206; match to protein family HMM PF03460; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.732 |
| ACO02962.1 | iscS | PERMA_0218 | PERMA_1065 | Cysteine desulfurase (Nitrogenase metalloclustersbiosynthesis protein NifS); Identified by match to protein family HMM PF00266. | Cysteine desulfurase IscS; Identified by match to protein family HMM PF00266. | 0.916 |
| ACO02975.1 | ACO04067.1 | PERMA_0163 | PERMA_0653 | Aspartate aminotransferase; Identified by match to protein family HMM PF00155. | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | 0.900 |
| ACO03468.1 | ACO04067.1 | PERMA_1891 | PERMA_0653 | Sulfur oxidation protein SoxY; Identified by match to protein family HMM TIGR01409. | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | 0.910 |
| ACO03468.1 | ACO04360.1 | PERMA_1891 | PERMA_0661 | Sulfur oxidation protein SoxY; Identified by match to protein family HMM TIGR01409. | Sulfur reductase FeS subunit; Identified by match to protein family HMM PF00037. | 0.900 |
| ACO03468.1 | ACO04466.1 | PERMA_1891 | PERMA_0517 | Sulfur oxidation protein SoxY; Identified by match to protein family HMM TIGR01409. | Ferredoxin-sulfite reductase; Identified by match to protein family HMM PF01077; match to protein family HMM PF01206; match to protein family HMM PF03460; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.406 |
| ACO03468.1 | ACO04684.1 | PERMA_1891 | PERMA_1888 | Sulfur oxidation protein SoxY; Identified by match to protein family HMM TIGR01409. | 5'-nucleotidase, C- domain protein; Identified by match to protein family HMM PF02872; match to protein family HMM TIGR01409; Belongs to the 5'-nucleotidase family. | 0.999 |
| ACO03468.1 | ACO04836.1 | PERMA_1891 | PERMA_1890 | Sulfur oxidation protein SoxY; Identified by match to protein family HMM TIGR01409. | Sulphur oxidation protein SoxZ; Identified by match to protein family HMM PF08770. | 0.999 |
| ACO04067.1 | ACO02962.1 | PERMA_0653 | PERMA_0218 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Cysteine desulfurase (Nitrogenase metalloclustersbiosynthesis protein NifS); Identified by match to protein family HMM PF00266. | 0.915 |
| ACO04067.1 | ACO02975.1 | PERMA_0653 | PERMA_0163 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Aspartate aminotransferase; Identified by match to protein family HMM PF00155. | 0.900 |
| ACO04067.1 | ACO03468.1 | PERMA_0653 | PERMA_1891 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Sulfur oxidation protein SoxY; Identified by match to protein family HMM TIGR01409. | 0.910 |
| ACO04067.1 | ACO04360.1 | PERMA_0653 | PERMA_0661 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Sulfur reductase FeS subunit; Identified by match to protein family HMM PF00037. | 0.940 |
| ACO04067.1 | ACO04466.1 | PERMA_0653 | PERMA_0517 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Ferredoxin-sulfite reductase; Identified by match to protein family HMM PF01077; match to protein family HMM PF01206; match to protein family HMM PF03460; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.952 |
| ACO04067.1 | ACO04684.1 | PERMA_0653 | PERMA_1888 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | 5'-nucleotidase, C- domain protein; Identified by match to protein family HMM PF02872; match to protein family HMM TIGR01409; Belongs to the 5'-nucleotidase family. | 0.913 |
| ACO04067.1 | ACO04836.1 | PERMA_0653 | PERMA_1890 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Sulphur oxidation protein SoxZ; Identified by match to protein family HMM PF08770. | 0.909 |
| ACO04067.1 | ACO04842.1 | PERMA_0653 | PERMA_0693 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Putative [NiFe] hydrogenasegamma subunit; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970. | 0.902 |
| ACO04067.1 | cysH | PERMA_0653 | PERMA_0519 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. | 0.932 |
| ACO04067.1 | iscS | PERMA_0653 | PERMA_1065 | Rhodanese domain protein; Identified by match to protein family HMM PF00581. | Cysteine desulfurase IscS; Identified by match to protein family HMM PF00266. | 0.915 |
| ACO04360.1 | ACO03468.1 | PERMA_0661 | PERMA_1891 | Sulfur reductase FeS subunit; Identified by match to protein family HMM PF00037. | Sulfur oxidation protein SoxY; Identified by match to protein family HMM TIGR01409. | 0.900 |
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