STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACO04828.1Hypothetical membrane associated protein; Identified by match to protein family HMM PF07883. (96 aa)    
Predicted Functional Partners:
ACO03905.1
Putative lipoprotein.
       0.773
ACO03014.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.773
ACO03658.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.773
ACO04518.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.773
ACO03897.1
Outer membrane lipoprotein carrier protein LolA; Identified by match to protein family HMM PF03548.
  
    0.765
ACO04782.1
Thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068.
  
    0.754
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.592
ACO03164.1
PP-loop domain protein; Identified by match to protein family HMM PF01171; match to protein family HMM TIGR00269; Belongs to the TtcA family.
       0.526
ACO03994.1
Conserved domain protein; Identified by match to protein family HMM PF02597.
       0.523
ACO04046.1
Gamma-glutamyltransferase; Identified by match to protein family HMM PF01019.
  
    0.455
Your Current Organism:
Persephonella marina
NCBI taxonomy Id: 123214
Other names: P. marina EX-H1, Persephonella marina EX-H1, Persephonella marina str. EX-H1, Persephonella marina strain EX-H1, bacterium EX-H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.