STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK55786.1Hypothetical protein. (310 aa)    
Predicted Functional Partners:
SEK42783.1
Probable Rubsico expression protein CbbX.
    
  0.870
SEL12318.1
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family.
    
  0.870
SEK69981.1
Thioredoxin 1.
    
 0.742
SEK58187.1
Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
    
 0.742
SEK90470.1
Thiol-disulfide isomerase or thioredoxin.
    
 0.742
SEK96868.1
Thiol-disulfide isomerase or thioredoxin.
    
 0.742
SEL16738.1
Thiol-disulfide isomerase or thioredoxin.
    
 0.742
SEK55738.1
L-alanine dehydrogenase; Belongs to the AlaDH/PNT family.
       0.682
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
  0.603
SEK56303.1
Phospholipid-binding protein, PBP family.
   
 
 0.555
Your Current Organism:
Nitrosovibrio tenuis
NCBI taxonomy Id: 1233
Other names: N. tenuis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.