STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC35389.1Cell elongation-specific peptidoglycan D,D-transpeptidase. (485 aa)    
Predicted Functional Partners:
SKC35396.1
Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Belongs to the SEDS family.
 
 0.999
SKC52863.1
Cell division-specific peptidoglycan biosynthesis regulator FtsW; Belongs to the SEDS family.
 
 0.983
SKC61380.1
Membrane carboxypeptidase (penicillin-binding protein).
 
 
 0.966
SKC35412.1
Inner membrane component of T3SS domain-containing protein.
 
   
 0.955
SKC52831.1
Cell division septal protein FtsQ; Essential cell division protein.
  
 
 0.944
SKC35421.1
Inner membrane component of T3SS domain-containing protein.
 
   
 0.926
SKC52923.1
Cell division protein FtsI (penicillin-binding protein 3).
  
  
0.916
SKC35402.1
Protein phosphatase.
 
  
 0.891
SKC35385.1
Serine/threonine protein kinase.
     
 0.878
crgA
Uncharacterised protein family (UPF0233); Involved in cell division; Belongs to the CrgA family.
   
 
 0.844
Your Current Organism:
Okibacterium fritillariae
NCBI taxonomy Id: 123320
Other names: Curtibacterium sp. VKM Ac-2059, Curtibacterium sp. VKM Ac-2062, Curtobacterium sp. VKM Ac-2059, Curtobacterium sp. VKM Ac-2062, IFO 16404, JCM 12284, NBRC 16404, O. fritillariae, Okibacterium fritillariae Evtushenko et al. 2002, VKM Ac-2059
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