STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C882_0190TRAP-type C4-dicarboxylate transport system, large permease component. (428 aa)    
Predicted Functional Partners:
C882_0192
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
 0.992
C882_1147
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
 0.985
C882_0191
Putative N-acetylneuraminate transporter.
 
 0.979
C882_3830
TRAP-type C4-dicarboxylate transporter.
 
 
 0.970
C882_1314
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
 
 0.914
C882_3860
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
 0.869
C882_0269
Malonyl CoA-acyl carrier protein transacylase.
   
 0.858
C882_1145
Putative N-acetylneuraminate transporter.
 0.826
C882_2272
Hypothetical protein.
 
 
 0.823
C882_3706
TRAP dicarboxylate transporter- DctP subunit.
 
 
 0.792
Your Current Organism:
Caenispirillum salinarum
NCBI taxonomy Id: 1238182
Other names: C. salinarum AK4, Caenispirillum salinarum AK4, Caenispirillum salinarum JCM 17360, Caenispirillum salinarum MTCC 10963, Caenispirillum sp. AK4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.