STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C882_0260Transcriptional regulator, GntR family. (241 aa)    
Predicted Functional Partners:
C882_1469
Transcriptional regulator.
  
  
 0.782
C882_3366
GntR-like protein.
  
  
 0.779
C882_1915
Transcriptional regulator.
  
  
 0.771
C882_0895
Transcriptional regulator, GntR-family.
  
     0.748
C882_4463
Acetolactate synthase small subunit.
  
    0.636
C882_1309
Transcriptional regulator, IclR family.
  
    0.496
C882_0261
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.471
Your Current Organism:
Caenispirillum salinarum
NCBI taxonomy Id: 1238182
Other names: C. salinarum AK4, Caenispirillum salinarum AK4, Caenispirillum salinarum JCM 17360, Caenispirillum salinarum MTCC 10963, Caenispirillum sp. AK4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.