STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proA_4Dimethylmenaquinone methyltransferase. (209 aa)    
Predicted Functional Partners:
SAI70417.1
Uncharacterized proteins%2C LmbE homologs.
 
  
 0.993
citE
Citrate lyase beta chain; Belongs to the HpcH/HpaI aldolase family.
    
 0.906
SAI67201.1
6-phosphogluconate dehydrogenase.
     0.712
SAI72554.1
Prephenate dehydrogenase.
     0.686
SAI70422.1
Putattive exported protein.
  
    0.670
ilvH
Acetolactate synthase 3 regulatory subunit.
     
  0.650
ilvI1_1
Acetolactate synthase isozyme III large subunit.
     
  0.650
ilvG_1
Thiamine pyrophosphate protein tpp-binding-domain containing protein; Belongs to the TPP enzyme family.
     
  0.650
ilvB
Acetolactate synthase large subunit; Belongs to the TPP enzyme family.
     
  0.650
ilvI2_2
Acetolactate synthase isozyme III large subunit.
     
  0.650
Your Current Organism:
Bordetella trematum
NCBI taxonomy Id: 123899
Other names: B. trematum, CCUG 32381, CIP 105351, DSM 11334, LMG 13506, LMG:13506, NCTC 12995
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.