STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D081_1126Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr. (451 aa)    
Predicted Functional Partners:
D081_0381
Myosin heavy chain.
  
     0.670
D081_0425
S-layer domain protein.
  
     0.661
D081_0380
Resolvase, RNase H domain protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.656
D081_1125
ATPase components of ABC transporter.
       0.597
D081_0414
Hypothetical protein.
 
     0.592
D081_1019
Polysaccharide pyruvyl transferase.
 
     0.525
mprF
Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms.
  
   
 0.517
D081_0378
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase.
 
  
 0.507
D081_2099
Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
     0.502
D081_1127
Histidinol-phosphatase; Belongs to the PHP hydrolase family. HisK subfamily.
       0.497
Your Current Organism:
Anaerovibrio sp. JC8
NCBI taxonomy Id: 1240085
Other names: A. sp. JC8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.