STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaRPca regulon regulatory protein; Positive regulator of all genes within the pca regulon, pcaBDC, pcaIJ and pcaF. Also required for the chemotactic response to aromatic compounds (291 aa)    
Predicted Functional Partners:
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Catalyzes an anti cycloisomerization
 
 
 0.813
AMZE01000030_gene1994
annotation not available
 
  
 0.773
pcaG
Protocatechuate 3,4-dioxygenase alpha chain; Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway
 
   
 0.688
pcaH
Protocatechuate 3,4-dioxygenase beta chain; Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway
 
   
 0.678
AMZE01000001_gene2845
annotation not available
 
   
 0.660
HA62_22165
annotation not available
 
   
 0.636
AMZE01000030_gene1995
annotation not available
  
   
 0.605
AMZE01000127_gene2378
annotation not available
   
    0.560
AMZE01000007_gene2788
annotation not available
  
 
 0.547
AMZE01000002_gene3071
annotation not available
 
   
 0.544
Your Current Organism:
Pseudomonas putida MTCC5279
NCBI taxonomy Id: 1240350
Other names: P. putida MTCC 5279, Pseudomonas putida MTCC 5279, Pseudomonas putida MTCC5279
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