STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV65642.1CRISPR/Cas system-associated RAMP protein; Pfam match to PF03787.11 RAMPs. (552 aa)    
Predicted Functional Partners:
ALV65637.1
CRISPR/Cas system-associated RAMP protein Cas10/Cmr2, type III-B.
 
     0.952
ALV65638.1
CRISPR/Cas system-associated RAMP protein Csm3, type III; Pfam match to PF03787.11 RAMPs.
 
     0.952
ALV65639.1
Hypothetical protein.
 
     0.952
ALV65640.1
CRISPR/Cas system-associated RAMP protein Csm3, type III (SSO1426 family; Pfam matches to PF03787.11 RAMPs, and to PF03787.11 RAMPs.
 
     0.952
ALV65241.1
RNA-binding protein; Pfam match to PF00076.18 RRM_1.
   
 0.891
ALV65641.1
CRISPR/Cas system-associated protein, type III (TIGR04423 family).
       0.791
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.676
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
   0.665
ALV64807.1
Putative ATP-dependent RNA helicase; Pfam matches to PF00270.25 DEAD, and to PF00271.27 Helicase_C; Belongs to the DEAD box helicase family.
  
 0.663
rpmA
Pfam match to PF01016.15 Ribosomal_L27; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.657
Your Current Organism:
Campylobacter fetus testudinum
NCBI taxonomy Id: 1244529
Other names: C. fetus subsp. testudinum Sp3, Campylobacter fetus subsp. testudinum Sp3, Campylobacter sp. Sp3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.