Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| def | rplC | CFTSP3_1708 | CFTSP3_0032 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Pfam match to PF00297.18 Ribosomal_L3. | 0.853 |
| def | rplV | CFTSP3_1708 | CFTSP3_0037 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.865 |
| def | rplW | CFTSP3_1708 | CFTSP3_0034 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.853 |
| def | rpsB | CFTSP3_1708 | CFTSP3_1470 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Pfam match to PF00318.16 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | 0.860 |
| def | rpsC | CFTSP3_1708 | CFTSP3_0038 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.853 |
| def | rpsG | CFTSP3_1708 | CFTSP3_1341 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.855 |
| def | rpsI | CFTSP3_1708 | CFTSP3_0397 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Pfam match to PF00380.15 Ribosomal_S9; Belongs to the universal ribosomal protein uS9 family. | 0.857 |
| def | rpsK | CFTSP3_1708 | CFTSP3_0058 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.854 |
| def | rpsU | CFTSP3_1708 | CFTSP3_0127 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Pfam match to PF01165.16 Ribosomal_S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.885 |
| def | tig | CFTSP3_1708 | CFTSP3_1711 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Trigger factor (peptidyl-prolyl cis /trans isomerase, chaperone); Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.973 |
| rplC | def | CFTSP3_0032 | CFTSP3_1708 | Pfam match to PF00297.18 Ribosomal_L3. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.853 |
| rplC | rplV | CFTSP3_0032 | CFTSP3_0037 | Pfam match to PF00297.18 Ribosomal_L3. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
| rplC | rplW | CFTSP3_0032 | CFTSP3_0034 | Pfam match to PF00297.18 Ribosomal_L3. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
| rplC | rpsB | CFTSP3_0032 | CFTSP3_1470 | Pfam match to PF00297.18 Ribosomal_L3. | Pfam match to PF00318.16 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | 0.986 |
| rplC | rpsC | CFTSP3_0032 | CFTSP3_0038 | Pfam match to PF00297.18 Ribosomal_L3. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.997 |
| rplC | rpsG | CFTSP3_0032 | CFTSP3_1341 | Pfam match to PF00297.18 Ribosomal_L3. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.987 |
| rplC | rpsI | CFTSP3_0032 | CFTSP3_0397 | Pfam match to PF00297.18 Ribosomal_L3. | Pfam match to PF00380.15 Ribosomal_S9; Belongs to the universal ribosomal protein uS9 family. | 0.989 |
| rplC | rpsK | CFTSP3_0032 | CFTSP3_0058 | Pfam match to PF00297.18 Ribosomal_L3. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.989 |
| rplC | rpsU | CFTSP3_0032 | CFTSP3_0127 | Pfam match to PF00297.18 Ribosomal_L3. | Pfam match to PF01165.16 Ribosomal_S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.917 |
| rplC | tig | CFTSP3_0032 | CFTSP3_1711 | Pfam match to PF00297.18 Ribosomal_L3. | Trigger factor (peptidyl-prolyl cis /trans isomerase, chaperone); Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.965 |
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