STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000341005_03630Unannotated protein. (396 aa)    
Predicted Functional Partners:
GCA_000341005_03031
Unannotated protein.
 
  
 0.984
GCA_000341005_00880
Unannotated protein.
   
 
 0.968
GCA_000341005_01380
Unannotated protein.
  
 
 0.962
GCA_000341005_02925
Unannotated protein.
 
 
 0.919
GCA_000341005_01378
Unannotated protein.
 
 
 0.907
GCA_000341005_01466
Unannotated protein.
  
  0.860
GCA_000341005_03875
Unannotated protein.
  
  0.860
GCA_000341005_03727
Unannotated protein.
    
  0.819
GCA_000341005_02062
Unannotated protein.
 
 
 0.778
GCA_000341005_03072
Unannotated protein.
  
  0.742
Your Current Organism:
Nocardiopsis alkaliphila
NCBI taxonomy Id: 1246461
Other names: N. alkaliphila YIM 80379, Nocardiopsis alkaliphila CCTCC AA001031, Nocardiopsis alkaliphila DSM 44657, Nocardiopsis alkaliphila YIM 80379
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.