STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLM28600.1OhcB2 (Protein with transmembrane helices). (164 aa)    
Predicted Functional Partners:
SLM28599.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.957
SLM29166.1
Molybdopterin oxidoreductase, transmembrane subunit.
 
 0.935
SLM29170.1
Putative cytochrome c, class III family protein (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.926
SLM27956.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
 0.861
SLM31342.1
NrfD family membrane protein.
 
 0.861
hmeB
HmeB.
 
 0.858
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.855
SLM30491.1
Protein DVU_0534.
  
 0.832
SLM27616.1
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.805
SLM29169.1
Molybdopterin oxidoreductase, molybdopterin-binding subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.801
Your Current Organism:
Desulfamplus magnetovallimortis
NCBI taxonomy Id: 1246637
Other names: Candidatus Desulfamplus magnetomortis, D. magnetovallimortis, DSM 103535, Desulfamplus magnetomortis, JCM 18010, strain BW-1
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