STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D779_0180FKBP-type peptidyl-prolyl cis-trans isomerase SlyD. (173 aa)    
Predicted Functional Partners:
rpsB
SSU ribosomal protein S2p (SAe); Belongs to the universal ribosomal protein uS2 family.
   
   0.940
rpsC
SSU ribosomal protein S3p (S3e); Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
  
   0.928
D779_0177
Adenylylsulfate reductase beta-subunit.
 
     0.882
D779_3064
[NiFe] hydrogenase nickel incorporation-associated protein HypB.
    
 0.864
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
    
 0.864
D779_0178
Adenylylsulfate reductase alpha-subunit.
 
   
 0.842
D779_3676
Formate hydrogenlyase subunit 5.
   
 
 0.819
D779_3674
Ni2+-binding GTPase involved in regulation of expression and maturation of hydrogenase.
    
 0.808
D779_0179
Hypothetical protein.
       0.795
D779_3365
Energy-conserving hydrogenase (ferredoxin), subunit E.
    
 
 0.771
Your Current Organism:
Imhoffiella purpurea
NCBI taxonomy Id: 1249627
Other names: I. purpurea, Imhoffiella purpurea Nupur et al. 2017, JCM 18851, KCTC 15575, MTCC 12304, Thiorhodococcus sp. AK35, strain AK35
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