AGP32620.1 protein (Sorangium cellulosum So01572)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGP32620.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)

Predicted Functional Partners:

AGP32619.1

0.998

AGP32179.1

0.992

AGP38139.1

0.986

AGP38409.1

0.983

AGP38410.1

0.983

AGP38404.1

0.972

AGP38400.1

0.969

AGP38411.1

0.961

AGP38403.1

0.935

AGP38412.1

0.921

Your Current Organism:

Sorangium cellulosum So01572

NCBI taxonomy Id: 1254432
Other names: S. cellulosum So0157-2, Sorangium cellulosum So0157-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGP32179.1	AGP32620.1	SCE1572_08595	SCE1572_30310	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AGP32179.1	AGP38139.1	SCE1572_08595	SCE1572_28905	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.957
AGP32179.1	AGP38400.1	SCE1572_08595	SCE1572_30320	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.882
AGP32179.1	AGP38403.1	SCE1572_08595	SCE1572_30335	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.939
AGP32179.1	AGP38404.1	SCE1572_08595	SCE1572_30340	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.876
AGP32179.1	AGP38409.1	SCE1572_08595	SCE1572_30370	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.971
AGP32179.1	AGP38410.1	SCE1572_08595	SCE1572_30375	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.971
AGP32179.1	AGP38411.1	SCE1572_08595	SCE1572_30380	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.833
AGP32179.1	AGP38412.1	SCE1572_08595	SCE1572_30385	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.931
AGP32619.1	AGP32620.1	SCE1572_30305	SCE1572_30310	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AGP32619.1	AGP38139.1	SCE1572_30305	SCE1572_28905	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.957
AGP32619.1	AGP38400.1	SCE1572_30305	SCE1572_30320	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.957
AGP32619.1	AGP38403.1	SCE1572_30305	SCE1572_30335	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.951
AGP32619.1	AGP38404.1	SCE1572_30305	SCE1572_30340	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.899
AGP32619.1	AGP38409.1	SCE1572_30305	SCE1572_30370	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.971
AGP32619.1	AGP38410.1	SCE1572_30305	SCE1572_30375	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.971
AGP32619.1	AGP38411.1	SCE1572_30305	SCE1572_30380	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.837
AGP32619.1	AGP38412.1	SCE1572_30305	SCE1572_30385	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.931
AGP32620.1	AGP32179.1	SCE1572_30310	SCE1572_08595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AGP32620.1	AGP32619.1	SCE1572_30310	SCE1572_30305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998