STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHM60886.1RagB/SusD domain-containing protein. (544 aa)    
Predicted Functional Partners:
AHM60887.1
TonB-dependent receptor plug; COG4206 Outer membrane cobalamin receptor protein.
 
 
   0.915
AHM60885.1
Hypothetical protein.
 
     0.907
AHM60884.1
Cell surface receptor IPT/TIG domain-containing protein.
 
     0.855
AHM59075.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
 
   0.785
AHM59702.1
COG4206 Outer membrane cobalamin receptor protein.
 
 
   0.714
AHM59137.1
COG0642 Signal transduction histidine kinase.
 
   
 0.700
AHM60888.1
COG0642 Signal transduction histidine kinase.
 
   
 0.695
AHM60880.1
ASPIC/UnbV domain-containing protein.
 
    0.672
AHM61644.1
COG4124 Beta-mannanase; Belongs to the glycosyl hydrolase 26 family.
  
     0.652
AHM61106.1
TonB-dependent outer membrane receptor.
 
 
   0.610
Your Current Organism:
Flammeovirgaceae bacterium 311
NCBI taxonomy Id: 1257021
Other names: F. bacterium 311
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