STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHM63582.1Hypothetical protein; COG0457 FOG: TPR repeat. (235 aa)    
Predicted Functional Partners:
AHM62196.1
COG0457 FOG: TPR repeat.
 
   
 0.800
AHM60939.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
     0.765
AHM63581.1
Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.682
AHM63583.1
COG1843 Flagellar hook capping protein.
       0.651
AHM58848.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.597
AHM61487.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.520
AHM62581.1
Tetratricopeptide TPR_1 repeat-containing protein; COG0457 FOG: TPR repeat.
 
     0.518
pgk
COG0126 3-phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
 
     0.505
AHM58552.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
     0.464
AHM63584.1
DNA/RNA helicase; COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
  
    0.462
Your Current Organism:
Flammeovirgaceae bacterium 311
NCBI taxonomy Id: 1257021
Other names: F. bacterium 311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.