STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_048040Zinc finger, c2h2 type domain containing protein. (391 aa)    
Predicted Functional Partners:
ACA1_176080
Leucine rich repeat domain containing protein.
    
 0.713
ACA1_066910
Serine/threonine kinase.
    
 0.664
ACA1_232480
Ribosomal protein S23 (S12), putative; Belongs to the universal ribosomal protein uS12 family.
    
 0.548
ACA1_291360
Ribosomal protein S11, putative.
   
 0.545
ACA1_039330
Roadblock/LC7 domain containing protein.
    
 0.543
ACA1_228660
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.
     
 0.532
ACA1_384660
Retinoblastoma binding protein 4 variant isoform 1, putative.
    
 0.528
ACA1_149890
Ribosomal protein S7p/S5e, putative; Belongs to the universal ribosomal protein uS7 family.
    
 0.524
ACA1_377440
Uncharacterized protein.
   
 0.519
ACA1_174430
Ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS15 family.
   
 0.517
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.