STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_063180Zinc finger, C3HC4 type (RING finger) domain containing protein. (171 aa)    
Predicted Functional Partners:
ACA1_318550
HECTdomain (Ubiquitin-transferase) domain containing protein.
   
 
 0.688
ACA1_052770
Ubiquitinconjugating enzyme subfamily protein.
   
 0.475
ACA1_025710
Ubiquitin domain containing protein.
    
 0.453
ACA1_098060
Ribosomal L40e family.
    
 0.453
ACA1_064870
Ubiquitin domain containing protein.
    
 0.453
ACA1_062100
Ubiquitin B isoform 2, putative.
    
 0.453
ACA1_110530
Polyubiqutin.
    
 0.453
ACA1_248410
Alpha2-macroglobulin domain containing protein.
    
 0.429
ACA1_184040
Ribosomal protein s27a, putative.
    
 0.429
ACA1_149990
Ubiquitin domain containing protein.
    
 0.429
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.