STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_230190RNA recognition motif domain containing protein. (417 aa)    
Predicted Functional Partners:
ACA1_069320
Eukaryotic initiation factor, putative; Belongs to the eukaryotic initiation factor 4E family.
   
 0.938
ACA1_234620
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
     
 
0.900
ACA1_058350
LsmAD domain containing protein.
   
 
 0.848
ACA1_077140
Nuclear cap-binding protein subunit 2.
   
 0.822
ACA1_192060
Initiation factor eif4 gamma, middle, putative.
    
 0.812
ACA1_149530
Elongation factor Tu GTP binding domain containing protein.
   
 0.801
ACA1_266080
DEAD/DEAH box helicase/helicase conserved Cterminal domain containing protein; Belongs to the DEAD box helicase family.
   
 0.756
ACA1_271270
Atpdependent rna helicase ddx6, putative; Belongs to the DEAD box helicase family.
   
 0.739
ACA1_220040
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.731
ACA1_097200
MIF4G domain containing protein.
   
 0.728
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.