STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA1_070580Vps23 domain containing protein. (287 aa)    
Predicted Functional Partners:
ACA1_045270
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
   
 0.967
ACA1_149540
Vacuolar protein sorting.
   
 0.959
ACA1_096720
FYVE zinc finger domain containing protein.
    
 0.956
ACA1_331360
EAP30/Vps36 family protein.
    
 0.922
ACA1_377960
Uncharacterized protein.
  
  
 
0.919
ACA1_234070
ELL complex EAP30 subunit.
    
 0.825
ACA1_063700
Vacuolarsorting protein SNF7, putative.
   
 0.813
ACA1_213340
Vacuolar proteinsorting-associated protein 25, putative.
   
 0.799
ACA1_048130
Charged multivesicular body protein, putative.
    
 0.790
ACA1_121520
Charged multivesicular body protein 2a 2 family protein.
   
 0.780
Your Current Organism:
Acanthamoeba castellanii
NCBI taxonomy Id: 1257118
Other names: A. castellanii str. Neff, Acanthamoeba castellanii Neff strain, Acanthamoeba castellanii str. Neff, Acanthamoeba castellanii strain Neff
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.