STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDE38062.1Methyltransferase; Product inferred by homology to UniProt; Belongs to the methyltransferase superfamily. (244 aa)    
Predicted Functional Partners:
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
      0.886
dnaX
dNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
      0.839
CDE38063.1
Stage 0 sporulation protein YaaT; Product inferred by homology to UniProt.
  
    0.811
CDE38064.1
Uncharacterized protein; Product inferred by homology to UniProt.
       0.791
CDE38065.1
Unknown; No significant homology to UniProt.
       0.773
CDE38067.1
Nucleoid-associated protein LLNZ_00655; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
       0.690
tmcAL
uPF0348 protein FGAG_00248; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
 
     0.672
CDE38567.1
Pyruvate phosphate dikinase; Product inferred by homology to UniProt.
    
  0.646
CDE38069.1
Cytidine and deoxycytidylate deaminase zinc-binding region; Product inferred by homology to UniProt.
       0.563
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.402
Your Current Organism:
Mycoplasma sp. CAG472
NCBI taxonomy Id: 1262904
Other names: M. sp. CAG:472, Mycoplasma sp. CAG:472
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