STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_01813.1VPS9 domain-containing protein. (809 aa)    
Predicted Functional Partners:
LCOR_03043.1
Gtp-binding protein rab11.
   
 0.995
LCOR_01765.1
Ubiquitin-40s ribosomal protein s31 fusionprotein.
    
 0.987
LCOR_00145.1
Gtp-binding protein ypt5.
   
 0.985
LCOR_00185.1
Gtp-binding protein ypt5.
   
 0.985
LCOR_02146.1
Alginate lyase.
   
 0.985
LCOR_01964.1
Zn(2)-C6 fungal-type domain-containing protein.
   
 0.985
LCOR_02054.1
Gtp-binding protein ypt5.
   
 0.985
LCOR_05262.1
Alginate lyase family protein.
   
 0.985
LCOR_00989.1
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.977
LCOR_03743.1
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.977
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
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