STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCOR_09542.1Gram domain-containing protein. (819 aa)    
Predicted Functional Partners:
LCOR_01676.1
Related to cch1-calcium channel (Alpha subunit).
    
  0.721
LCOR_07804.1
Calcium channel subunit cch1.
    
  0.721
LCOR_08750.1
Calcium-channel protein cch1.
    
  0.721
LCOR_08749.1
Ion_trans domain-containing protein.
    
  0.721
LCOR_10564.1
Voltage-gated ca2 alpha1 subunits.
    
  0.721
LCOR_02393.1
Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
    
   0.481
LCOR_00234.1
Elongation factor 3.
    
   0.436
LCOR_00233.1
Elongation factor 3.
    
   0.436
LCOR_02407.1
Elongation factor 3.
    
   0.436
LCOR_02406.1
Elongation factor 3.
    
   0.436
Your Current Organism:
Lichtheimia corymbifera
NCBI taxonomy Id: 1263082
Other names: L. corymbifera JMRC:FSU:9682, Lichtheimia corymbifera CBS 429.75, Lichtheimia corymbifera FSU 9682, Lichtheimia corymbifera JMRC:FSU:9682
Server load: low (30%) [HD]