STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AVS7_02158Putative transmembrane protein; Gene_12; identified by MetaGeneAnnotator; putative. (131 aa)    
Predicted Functional Partners:
rnc
dsRNA-specific ribonuclease; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.822
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.808
AVS7_02159
Signal peptidase I; Gene_13; identified by MetaGeneAnnotator; putative; Belongs to the peptidase S26 family.
  
    0.793
AVS7_04659
Putative signal peptide protein; Gene_362; identified by MetaGeneAnnotator; putative.
  
     0.771
AVS7_03500
Chemotaxis signal transduction protein; Gene_173; identified by MetaGeneAnnotator; putative.
  
     0.762
AVS7_03606
Hypothetical protein; Gene_279; identified by MetaGeneAnnotator; putative.
  
     0.758
AVS7_03800
Predicted GTPases; Gene_7; identified by MetaGeneAnnotator; putative.
  
     0.756
AVS7_02861
Tfp pilus assembly protein PilP; Gene_29; identified by MetaGeneAnnotator; putative.
  
   
 0.748
AVS7_01707
Hypothetical protein; Gene_19; identified by MetaGeneAnnotator; putative.
  
     0.745
AVS7_02860
Tfp pilus assembly protein PilO; Gene_28; identified by MetaGeneAnnotator; putative.
  
   
 0.742
Your Current Organism:
Acidovorax sp. MRS7
NCBI taxonomy Id: 1268622
Other names: A. sp. MR-S7, Acidovorax sp. MR-S7
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