STRINGSTRING
SMAR000307-PA protein (Strigamia maritima) - STRING interaction network
"SMAR000307-PA" - annotation not available in Strigamia maritima
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAR000307-PAannotation not available (981 aa)    
Predicted Functional Partners:
SMAR001144-PA
annotation not available (310 aa)
     
0.851
SMAR013693-PA
annotation not available (510 aa)
     
 
  0.634
SMAR000461-PA
annotation not available (4225 aa)
     
   
  0.631
SMAR003846-PA
annotation not available (947 aa)
     
   
  0.580
SMAR011553-PA
annotation not available (544 aa)
           
  0.518
SMAR005693-PA
annotation not available (986 aa)
           
  0.499
SMAR008435-PA
annotation not available (755 aa)
     
   
  0.496
SMAR009396-PA
annotation not available (462 aa)
       
  0.459
PAN2
PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3’-5’ exonucleolytic degradation, or deadenlyation-dependent [...] (1176 aa)
     
   
  0.449
SMAR014446-PA
annotation not available (96 aa)
     
  0.444
Your Current Organism:
Strigamia maritima
NCBI taxonomy Id: 126957
Other names: S. maritima, Strigamia maritima
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