STRINGSTRING
SMAR000318-PA protein (Strigamia maritima) - STRING interaction network
"SMAR000318-PA" - annotation not available in Strigamia maritima
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAR000318-PAannotation not available (723 aa)    
Predicted Functional Partners:
SMAR006704-PA
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (800 aa)
   
  0.953
SMAR008660-PA
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (765 aa)
     
  0.902
SMAR009793-PA
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit (634 aa)
     
  0.902
SMAR002931-PA
annotation not available (1300 aa)
     
 
  0.899
SMAR015684-PA
annotation not available (520 aa)
     
 
  0.894
SMAR004524-PA
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes (235 aa)
     
  0.890
SMAR007422-PA
annotation not available (628 aa)
     
    0.889
SMAR007427-PA
Putative tRNA (cytidine(32)/guanosine(34)-2’-O)-methyltransferase; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (318 aa)
   
  0.887
SMAR014946-PA
annotation not available (297 aa)
     
  0.887
SMAR007550-PA
annotation not available (256 aa)
     
  0.884
Your Current Organism:
Strigamia maritima
NCBI taxonomy Id: 126957
Other names: S. maritima, Strigamia maritima
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