STRINGSTRING
SMAR000666-PA protein (Strigamia maritima) - STRING interaction network
"SMAR000666-PA" - annotation not available in Strigamia maritima
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAR000666-PAannotation not available (327 aa)    
Predicted Functional Partners:
SMAR013240-PA
annotation not available (247 aa)
   
  0.984
SMAR008938-PA
annotation not available (1089 aa)
     
  0.977
SMAR004676-PA
annotation not available (1341 aa)
     
  0.965
Fen1
Flap endonuclease 1; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a [...] (375 aa)
   
  0.953
SMAR010050-PA
annotation not available (237 aa)
     
  0.952
SMAR000653-PA
DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Underwinds duplex DNA (339 aa)
   
0.939
SMAR001190-PA
Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage (1734 aa)
   
  0.938
SMAR010411-PA
annotation not available (658 aa)
   
  0.937
SMAR001975-PA
annotation not available (2434 aa)
       
  0.926
SMAR011481-PA
annotation not available (1319 aa)
   
  0.925
Your Current Organism:
Strigamia maritima
NCBI taxonomy Id: 126957
Other names: S. maritima, Strigamia maritima
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