STRINGSTRING
SMAR000769-PA protein (Strigamia maritima) - STRING interaction network
"SMAR000769-PA" - annotation not available in Strigamia maritima
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAR000769-PAannotation not available (566 aa)    
Predicted Functional Partners:
SMAR007788-PA
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs (383 aa)
       
 
  0.669
SMAR015121-PA
annotation not available (634 aa)
     
 
    0.641
SMAR003083-PA
annotation not available (1573 aa)
     
 
    0.641
SMAR000651-PA
annotation not available (1473 aa)
     
 
    0.641
SMAR013364-PA
annotation not available (212 aa)
     
 
    0.638
SMAR009964-PA
Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3’-end formation (426 aa)
           
  0.608
SMAR005910-PA
annotation not available (253 aa)
           
  0.588
SMAR000282-PA
annotation not available (295 aa)
       
      0.542
SMAR015708-PA
annotation not available (289 aa)
           
  0.436
SMAR003034-PA
annotation not available (898 aa)
     
 
    0.406
Your Current Organism:
Strigamia maritima
NCBI taxonomy Id: 126957
Other names: S. maritima, Strigamia maritima
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