STRINGSTRING
SMAR000796-PA protein (Strigamia maritima) - STRING interaction network
"SMAR000796-PA" - annotation not available in Strigamia maritima
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAR000796-PAannotation not available (348 aa)    
Predicted Functional Partners:
SMAR004522-PA
O-phosphoseryl-tRNA(Sec) selenium transferase; Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl- tRNA(Sec) required for selenoprotein biosynthesis (475 aa)
     
 
  0.972
SMAR012930-PA
annotation not available (500 aa)
     
 
  0.969
SMAR003746-PA
annotation not available (432 aa)
         
  0.966
SMAR008543-PA
annotation not available (1167 aa)
           
  0.829
SMAR005808-PA
annotation not available (299 aa)
           
  0.829
SMAR003217-PA
annotation not available (547 aa)
           
  0.815
SMAR006856-PA
annotation not available (254 aa)
           
  0.733
SMAR002272-PA
tRNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3’,5’- phosphodiester. May act as a RNA ligase with broad substrate specificity, and may function toward other RNAs (505 aa)
           
  0.651
SMAR011918-PA
Elongator complex protein 3; Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (548 aa)
     
  0.632
SMAR011011-PA
annotation not available (1466 aa)
           
  0.590
Your Current Organism:
Strigamia maritima
NCBI taxonomy Id: 126957
Other names: S. maritima, Strigamia maritima
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