STRINGSTRING
SMAR001817-PA protein (Strigamia maritima) - STRING interaction network
"SMAR001817-PA" - annotation not available in Strigamia maritima
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAR001817-PAannotation not available (324 aa)    
Predicted Functional Partners:
SMAR015297-PA
annotation not available (1010 aa)
       
 
  0.870
SMAR008756-PA
annotation not available (1174 aa)
     
  0.832
SMAR008663-PA
annotation not available (231 aa)
     
  0.714
SMAR001404-PA
annotation not available (163 aa)
     
 
  0.712
SMAR004591-PA
annotation not available (199 aa)
       
 
  0.710
SMAR008856-PA
annotation not available (95 aa)
     
  0.691
SMAR013766-PA
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co-transcriptionally to the 5’ cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requi [...] (165 aa)
     
 
  0.664
SMAR012596-PA
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co-transcriptionally to the 5’ cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requi [...] (154 aa)
     
 
  0.664
SMAR007341-PA
annotation not available (130 aa)
     
  0.660
SMAR013061-PA
annotation not available (119 aa)
     
  0.655
Your Current Organism:
Strigamia maritima
NCBI taxonomy Id: 126957
Other names: S. maritima, Strigamia maritima
Server load: low (13%) [HD]