STRINGSTRING
SMAR001861-PA protein (Strigamia maritima) - STRING interaction network
"SMAR001861-PA" - annotation not available in Strigamia maritima
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAR001861-PAannotation not available (799 aa)    
Predicted Functional Partners:
SMAR009266-PA
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway (182 aa)
   
  0.940
SMAR009057-PA
annotation not available (236 aa)
   
  0.926
SMAR011058-PA
annotation not available (440 aa)
     
  0.923
SMAR014935-PA
annotation not available (997 aa)
       
 
  0.899
SMAR008431-PA
annotation not available (349 aa)
     
  0.888
SMAR006927-PA
annotation not available (387 aa)
     
 
  0.867
SMAR002370-PA
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (360 aa)
   
  0.830
SMAR003928-PA
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (1670 aa)
     
 
  0.814
SMAR012432-PA
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA (535 aa)
     
 
    0.805
SMAR013166-PA
annotation not available (1963 aa)
       
 
  0.793
Your Current Organism:
Strigamia maritima
NCBI taxonomy Id: 126957
Other names: S. maritima, Strigamia maritima
Server load: low (14%) [HD]