STRINGSTRING
SMAR001903-PA protein (Strigamia maritima) - STRING interaction network
"SMAR001903-PA" - annotation not available in Strigamia maritima
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAR001903-PAannotation not available (221 aa)    
Predicted Functional Partners:
SMAR002370-PA
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (360 aa)
     
  0.989
SMAR003092-PA
annotation not available (631 aa)
     
  0.977
SMAR003394-PA
annotation not available (360 aa)
     
  0.974
SMAR013618-PA
annotation not available (421 aa)
     
  0.964
SMAR001035-PA
annotation not available (871 aa)
     
 
  0.955
SMAR003928-PA
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (1670 aa)
     
 
  0.945
SMAR002535-PA
annotation not available (918 aa)
     
  0.943
SMAR006349-PA
annotation not available (770 aa)
     
  0.941
SMAR008390-PA
annotation not available (276 aa)
     
 
    0.936
SMAR006927-PA
annotation not available (387 aa)
     
 
    0.934
Your Current Organism:
Strigamia maritima
NCBI taxonomy Id: 126957
Other names: S. maritima, Strigamia maritima
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